Hi there 👋

I'm a Bioinformatician at FGCZ – ETH Zurich, specializing in single-cell and spatial transcriptomics.

🔬 What I do

I support researchers across Switzerland with cutting-edge genomics technologies, including:

• Spatial platforms: 10x Xenium, VisiumHD, CosMx
• Single-cell: 10x Chromium, BD Rhapsody
• Analysis: Multi-omics integration, immune profiling, custom pipelines

🛠️ Featured projects

🤖 spatial-scribe - Self-serve spatial-transcriptomics analysis, built with Claude: a guided wizard, an interactive spatial canvas, and plain-language questions take you from a raw Xenium/CosMx section to annotated cell types and a shareable report, with honest per-cell confidence.

⚡ rctd-py - GPU-accelerated RCTD for spatial transcriptomics.

📍 Spatial_transcriptomics_tools - A curated list of spatial transcriptomics analysis tools organized by category (segmentation, deconvolution, spatial domains, etc.)

📏 spatial-anno-metrics - Quality metrics for spatial cell-type annotation: internal validity, marker-program fidelity, deconvolution, and spatial signal QC.

💬 Let's connect

I'm always happy to discuss single-cell, spatial biology, or AI/ML applications in genomics.

• 🌐 Website
• 🎓 Google Scholar
• 🔬 ORCID
• 💼 LinkedIn

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