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42 followers · 42 following

Achievements

Achievement: Pair Extraordinairex3Achievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex3Achievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: StarstruckAchievement: Arctic Code Vault Contributor

Organizations

@biom262 @beelabhmc @snakemake @studycloud @bioinfo-ucsd @gymrek-lab @CAST-genomics

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aryarm/README.md

Arya Massarat

Bioinformatics PhD Student in the lab of Melissa Gymrek @ UC San Diego

Reproducibility enthusiast | Fine-mapping, GWAS | he/him/his

My work

happler haptools

VarCA as_analysis

flower_map

Other tools I help maintain

TRTools panCT

core

Past projects

demux VarBench

sc_rats demux

demux

Projects I have contributed to

WASP snakemake

bioconda-recipes bioconda-recipes

Other helpful resources and fun projects

demo-docker-action transit

stepik-cli hmcbbq

Pinned Loading

  1. gymrek-lab/happler gymrek-lab/happler Public

    A haplotype-based fine-mapping method

    Python 3

  2. mcvickerlab/varCA mcvickerlab/varCA Public

    Use an ensemble of variant callers to call variants from ATAC-seq data

    Python 23 6

  3. CAST-genomics/haptools CAST-genomics/haptools Public

    Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

    Python 27 5

  4. beelabhmc/flower_map beelabhmc/flower_map Public

    Automated flower species classification for generating honey-bee foraging maps from drone imagery

    Python 5 2